species:   Scscl
pid:       PID1767
parent:    Ssc-milR-243
paralog:   
locus:     NW_001820820.1:218543-218628
matures:   ['UGAGGCAGUUCGAUCGUCUAUG', 'AUGAGAUUUGUGUCCAGC']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NW_001820820.1:218543-218628

9 out of bounds
16 alignments
9 proper strand
8 stranded perfect matches

******************                                            ************************
AUGAGAUUUGUGUCCAGCGUCCCUUCAUCAAAACUGUUCGCAGUGAUGGUGUAAGGUUGCAUGCUGAGGCAGUUCGAUCGUCUAUG
..((((((..((((((((((((((((((((..((((....))))..))))).))))..).)))))).))))....)))).))....
----------------------------------------------------------------UGAGGCAGUUCGAUCGUCUAUG l=22 a=2 c
AUGAGAUUUGUGUCCAGC-------------------------------------------------------------------- l=18 a=0 c*
----------------------------------------------------------------UGAGGCAGUUCGAUCGUCUAUG l=22 a=2 ma
AUGAGAUUUGUGUCCAGC-------------------------------------------------------------------- l=18 a=0 ma*

------------UCCAGCGUCCCUUCAUCAAAACU--------------------------------------------------- l=23 a=1 
------------------------UuAUCAAAACUGUUCGCAGUGAUG-------------------------------------- l=24 a=1 
----------------------------------------------UGGUGUAAGGUUGCAUGCUGAGG----------------- l=23 a=1 
---------------------------------------------------------UGCAUGCUGAGGCAGUUCGAU-------- l=21 a=1 
----------------------------------------------------------GCAUGCUGAGGCAGUUCGAUCGUCU--- l=25 a=1 
-------------------------------------------------------------UGCUGAGGCAGUUCGAUCGUCUAU- l=24 a=1 
---------------------------------------------------------------CUGAGGCAGUUCGAUCGUCU--- l=20 a=1 
----------------------------------------------------------------UGAGGCAGUUCGAUCGUCUAUG l=22 a=2 (c,ma)

mb-01010
ax-1011011
ku-01
ss-111110101000
fn-101
